.. _sphx_glr_gallery_biology:

Biology and Ecology
+++++++++++++++++++



.. raw:: html

    <div class="sphx-glr-thumbnails">

.. thumbnail-parent-div-open

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example visualises network of putatively interacting proteins according to the STRING database, filtered to include only entries related to breast cancer.">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_breast_cancer_ppi_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_breast_cancer_ppi.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Breast cancer proteins</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to visualise Protein Protein Interaction (PPI) networks using iplotx.">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_ppi_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_ppi.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Protein Protein Interactions</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example from cogent3 shows how to use iplotx to visualise a phylogenetic tree of many animals.">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_animal_phylogeny_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_animal_phylogeny.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Animal phylogeny</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to visualise the bipartite relationship between plants and their pollinators using iplotx.">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_pollinators_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_pollinators.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Pollinators</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example visualises protein protein interactions involved in the &quot;cell cycle arrest&quot; pathway.">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_cell_cycle_arrest_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_cell_cycle_arrest.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Cell cycle arrest</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example visualises a subset of the tricarboxylic acid (TCA) cycle, also known as the Krebs cycle or citric acid cycle.">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_tca_cycle_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_tca_cycle.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">TCA cycle</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to visualise the antibodies of a large repertoire clone with iplotx.">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_antibody_clone_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_antibody_clone.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Antibody clones</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example visualises a table of foraging strategies, as found at https://doi.org/10.1111/1365-2656.13609.">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_foraging_table_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_foraging_table.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Foraging table</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example visualises a food network, with data taken from https://doi.org/10.3389/fevo.2020.588430 (Supplementary Table S1).">

.. only:: html

  .. image:: /gallery/biology/images/thumb/sphx_glr_plot_food_network_thumb.png
    :alt:

  :ref:`sphx_glr_gallery_biology_plot_food_network.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Food network</div>
    </div>


.. thumbnail-parent-div-close

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /gallery/biology/plot_breast_cancer_ppi
   /gallery/biology/plot_ppi
   /gallery/biology/plot_animal_phylogeny
   /gallery/biology/plot_pollinators
   /gallery/biology/plot_cell_cycle_arrest
   /gallery/biology/plot_tca_cycle
   /gallery/biology/plot_antibody_clone
   /gallery/biology/plot_foraging_table
   /gallery/biology/plot_food_network