.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "gallery/tree/plot_ete4.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_gallery_tree_plot_ete4.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_gallery_tree_plot_ete4.py:


ETE4 tree
=========

This example shows how to use `iplotx` to plot trees from `ete4`.

.. GENERATED FROM PYTHON SOURCE LINES 7-22

.. code-block:: Python


    from ete4 import Tree
    import iplotx as ipx

    tree = Tree(
        "((),((),(((),()),((),()))));",
    )

    ipx.plotting.tree(
        tree,
        aspect=1,
        edge_color="grey",
        edge_linestyle=["--", "-"],
    )




.. image-sg:: /gallery/tree/images/sphx_glr_plot_ete4_001.png
   :alt: plot ete4
   :srcset: /gallery/tree/images/sphx_glr_plot_ete4_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <iplotx.tree.TreeArtist object at 0x7af382c1dbd0>



.. GENERATED FROM PYTHON SOURCE LINES 23-26

`iplotx` can compute a radial tree layout as well, and usual style modifications
work for trees same as networks. Moreover, trees have a layout style option to
choose the starting angle and angular span of the radial layout.

.. GENERATED FROM PYTHON SOURCE LINES 26-58

.. code-block:: Python


    # sphinx_gallery_thumbnail_number = 2
    ipx.plotting.tree(
        tree,
        layout="radial",
        layout_orientation="right",
        style=[
            "tree",
            {
                "edge": {
                    "color": "deeppink",
                    "linewidth": 4,
                },
                "layout": {
                    "start": -180,
                    "span": 180,
                },
                "leaf": {
                    "label": {
                        "hmargin": 15,
                    }
                },
                "leafedge": {
                    "color": "purple",
                    "linewidth": 2,
                },
            },
        ],
        leaf_labels={leaf: str(i + 1) for i, leaf in enumerate(tree.leaves())},
        aspect=1,
        margin=0.1,
    )



.. image-sg:: /gallery/tree/images/sphx_glr_plot_ete4_002.png
   :alt: plot ete4
   :srcset: /gallery/tree/images/sphx_glr_plot_ete4_002.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <iplotx.tree.TreeArtist object at 0x7af382c1d310>




.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.076 seconds)


.. _sphx_glr_download_gallery_tree_plot_ete4.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_ete4.ipynb <plot_ete4.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_ete4.py <plot_ete4.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_ete4.zip <plot_ete4.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_