.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "gallery/tree/plot_leafedges_and_cascades.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_gallery_tree_plot_leafedges_and_cascades.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_gallery_tree_plot_leafedges_and_cascades.py:


Leaf edges and cascades
=======================

This short example demonstrates how to combine leaf edges and cascades.

.. GENERATED FROM PYTHON SOURCE LINES 7-37



.. image-sg:: /gallery/tree/images/sphx_glr_plot_leafedges_and_cascades_001.png
   :alt: plot leafedges and cascades
   :srcset: /gallery/tree/images/sphx_glr_plot_leafedges_and_cascades_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <iplotx.tree.TreeArtist object at 0x7af382c1c050>





|

.. code-block:: Python


    from Bio import Phylo
    from io import StringIO
    import iplotx as ipx

    # Make a tree from a string in Newick format
    tree = next(
        Phylo.NewickIO.parse(
            StringIO(
                "(()(()((()())(()()))))",
            )
        )
    )

    backgrounds = {
        tree.get_nonterminals()[3]: "turquoise",
        tree.get_terminals()[0]: "tomato",
        tree.get_terminals()[1]: "purple",
    }

    ipx.plotting.tree(
        tree,
        cascade_facecolor=backgrounds,
        cascade_extend=True,
        leaf_labels={leaf: f"L{i + 1}" for i, leaf in enumerate(tree.get_terminals())},
        edge_color="#111",
        leafedge_linewidth=2,
        leafedge_color="steelblue",
        leafedge_linestyle=":",
    )


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.045 seconds)


.. _sphx_glr_download_gallery_tree_plot_leafedges_and_cascades.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_leafedges_and_cascades.ipynb <plot_leafedges_and_cascades.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_leafedges_and_cascades.py <plot_leafedges_and_cascades.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_leafedges_and_cascades.zip <plot_leafedges_and_cascades.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_