.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "gallery/tree/plot_tree_style_clades.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_gallery_tree_plot_tree_style_clades.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_gallery_tree_plot_tree_style_clades.py:


Subtree styling
===============

This example shows how to style tree clades - or subtrees - post rendering,
similar of the equivalent option in `cogent3`.

.. GENERATED FROM PYTHON SOURCE LINES 8-38

.. code-block:: Python


    import cogent3
    import matplotlib.pyplot as plt
    import iplotx as ipx

    tree = cogent3.load_tree("data/tree-with-support.json")

    fig, ax = plt.subplots(figsize=(8, 8))
    art = ipx.tree(
        tree,
        layout="radial",
        ax=ax,
        leaf_labels=True,
        layout_angular=True,
        leaf_deep=False,
        margin=0.1,
    )

    # Style the subtree spanned by the first two leaves
    # with red edges.
    art.style_subtree(
        tree.tips()[:2],
        {
            "edge": {
                "color": "red",
            },
        },
    )





.. image-sg:: /gallery/tree/images/sphx_glr_plot_tree_style_clades_001.png
   :alt: plot tree style clades
   :srcset: /gallery/tree/images/sphx_glr_plot_tree_style_clades_001.png
   :class: sphx-glr-single-img





.. GENERATED FROM PYTHON SOURCE LINES 39-40

The same can be done with nonangular layouts:

.. GENERATED FROM PYTHON SOURCE LINES 40-59

.. code-block:: Python


    fig, ax = plt.subplots(figsize=(8, 8))
    art = ipx.tree(
        tree,
        layout="horizontal",
        ax=ax,
        leaf_labels=True,
        layout_angular=False,
        leaf_deep=False,
        margin=0.1,
    )
    art.style_subtree(
        tree.tips()[:2],
        {
            "edge": {
                "color": "red",
            },
        },
    )



.. image-sg:: /gallery/tree/images/sphx_glr_plot_tree_style_clades_002.png
   :alt: plot tree style clades
   :srcset: /gallery/tree/images/sphx_glr_plot_tree_style_clades_002.png
   :class: sphx-glr-single-img






.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.179 seconds)


.. _sphx_glr_download_gallery_tree_plot_tree_style_clades.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_tree_style_clades.ipynb <plot_tree_style_clades.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_tree_style_clades.py <plot_tree_style_clades.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_tree_style_clades.zip <plot_tree_style_clades.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_