.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "gallery/tree/plot_dendropy.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_gallery_tree_plot_dendropy.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_gallery_tree_plot_dendropy.py:


Dendropy tree
=============

This example shows how to use ``iplotx`` to plot trees from ``dendropy``.

.. GENERATED FROM PYTHON SOURCE LINES 7-20

.. code-block:: Python


    from dendropy import Tree
    import iplotx as ipx

    tree = Tree.get(data="((,(,((,),(,)))));", schema="newick")

    ipx.plotting.tree(
        tree,
        aspect=1,
        edge_color="grey",
        edge_linestyle=["--", "-"],
    )




.. image-sg:: /gallery/tree/images/sphx_glr_plot_dendropy_001.png
   :alt: plot dendropy
   :srcset: /gallery/tree/images/sphx_glr_plot_dendropy_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <iplotx.tree.TreeArtist object at 0x7dd1a57116d0>



.. GENERATED FROM PYTHON SOURCE LINES 21-23

`iplotx` can compute a radial tree layout as well, and usual style modifications
work for trees same as networks.

.. GENERATED FROM PYTHON SOURCE LINES 23-51

.. code-block:: Python


    # sphinx_gallery_thumbnail_number = 2
    ipx.plotting.tree(
        tree,
        layout="radial",
        layout_orientation="right",
        style=[
            "tree",
            {
                "edge": {
                    "color": "navy",
                    "linewidth": 4,
                },
                "leaf": {
                    "label": {
                        "hmargin": 15,
                    }
                },
                "leafedge": {
                    "color": "steelblue",
                    "linewidth": 2,
                },
            },
        ],
        leaf_labels={leaf: str(i + 1) for i, leaf in enumerate(tree.leaf_nodes())},
        aspect=1,
        margin=(0.3, 0.1),
    )



.. image-sg:: /gallery/tree/images/sphx_glr_plot_dendropy_002.png
   :alt: plot dendropy
   :srcset: /gallery/tree/images/sphx_glr_plot_dendropy_002.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <iplotx.tree.TreeArtist object at 0x7dd1a5d66210>




.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.073 seconds)


.. _sphx_glr_download_gallery_tree_plot_dendropy.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_dendropy.ipynb <plot_dendropy.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_dendropy.py <plot_dendropy.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_dendropy.zip <plot_dendropy.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_