.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "gallery/tree/plot_skbio_tree.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_gallery_tree_plot_skbio_tree.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_gallery_tree_plot_skbio_tree.py:


scikit-bio tree
===============

This example shows how to use `iplotx` to plot trees from `skbio` or scikit-bio.

.. GENERATED FROM PYTHON SOURCE LINES 7-24

.. code-block:: Python


    from io import StringIO
    from skbio import TreeNode
    import iplotx as ipx

    tree = TreeNode.read(
        StringIO(
            "((),((),(((),()),((),()))));",
        )
    )
    ipx.plotting.tree(
        tree,
        layout="radial",
        aspect=1,
        edge_color="purple",
    )




.. image-sg:: /gallery/tree/images/sphx_glr_plot_skbio_tree_001.png
   :alt: plot skbio tree
   :srcset: /gallery/tree/images/sphx_glr_plot_skbio_tree_001.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <iplotx.tree.TreeArtist object at 0x7dd1a5d22990>



.. GENERATED FROM PYTHON SOURCE LINES 25-27

`iplotx` can compute a standard rectangular tree layout as well, and usual style modifications
work for trees same as networks:

.. GENERATED FROM PYTHON SOURCE LINES 27-40

.. code-block:: Python


    ipx.plotting.tree(
        tree,
        style=[
            "tree",
            {
                "edge": {
                    "color": "deeppink",
                    "linewidth": 4,
                },
            },
        ],
    )



.. image-sg:: /gallery/tree/images/sphx_glr_plot_skbio_tree_002.png
   :alt: plot skbio tree
   :srcset: /gallery/tree/images/sphx_glr_plot_skbio_tree_002.png
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none


    <iplotx.tree.TreeArtist object at 0x7dd1fb788410>




.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.379 seconds)


.. _sphx_glr_download_gallery_tree_plot_skbio_tree.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_skbio_tree.ipynb <plot_skbio_tree.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_skbio_tree.py <plot_skbio_tree.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_skbio_tree.zip <plot_skbio_tree.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_